2023
Mischa Uebachs · Philipp Wegner·Sebastian Schaaf · Simon Kugai ·Heike Jacobi ·Sheng‑Han Kuo · Tetsuo Ashizawa · Juliane Fluck · EUROSCA study group · ESMI study group · RISCA study group · CRC-SCA study group · SCA Registry stu (2023) SCAview: an Intuitive Visual Approach to the Integrative Analysis of Clinical Data in Spinocerebellar Ataxias, The Cerebellum, https://doi.org/10.1007/s12311-023-01546-0, https://link.springer.com/content/pdf/10.1007/s12311-023-01546-0.pdf.
2022
Lisa Langnickel Johannes Darms, Katharina Heldt, Denise Ducks, Juliane Fluck (2022) Continuous development of the semantic search engine preVIEW: from COVID-19 to long COVID, Database Volume 2022, baac048; DOI: 10.1093/database/baac048
Philipp Wegner, Sebastian Schaaf, Mischa Uebachs, Daniel Domingo-Fernández, Yasamin Salimi, Stephan Gebel, Astghik Sargsyan, Colin Birkenbihl, Stephan Springstubbe, Thomas Klockgether, Juliane Fluck, Martin Hofmann-Apitius, Alpha Tom Kodamullil (2022) Integrative Data Semantics through a Model-enabled Data Stewardship, Bioinformatics, Volume 38, Issue 15, 1 August 2022, Pages 3850–3852, DOI: 10.1093/bioinformatics/btac375
Julia Sasse, Johannes Darms, Juliane Fluck (2022) Semantic Metadata Annotation Services in the Biomedical Domain—A Literature Review , Applied Sciences
Juliane Fluck,Lisa Kühnel, Manuel Lentzen, Sumit Madan, Vanessa Lage-Rupprecht, Marc Jacobs, Mirja Mittermaier, Martin Witzenrath, Peter Brunecker, Martin Hofmann-Apitius, Joachim Weber, Holger Fröhlich (2022) Critical assessment of transformer-based AI models for German clinical notes, https://doi.org/10.1093/jamiaopen/ooac087
Lisa Kühnel, Juliane Fluck (2022) We are not ready yet: limitations of state-of-the-art disease named entity recognizers, Journal of Biomedical Semantics,13 (1), S.26, 2022-10-27
Lisa Langnickel, Alexander Schulz, Barbara Hammer, Juliane Fluck (2022) BERT WEAVER: Using WEight AVERaging to Enable Lifelong Learning for Transformer-based Models, arXiv:2202.10101 [cs.CL] (or arXiv:2202.10101v1 [cs.CL] for this version) https://doi.org/10.48550/arXiv.2202.10101
Lisa Langnickel, Alexander Schulz, Barbara Hammer, Juliane Fluck (2022) BERT WEAVER: Using WEight AVERaging to Enable Lifelong Learning for Transformer-based Models, arXiv
Lisa Langnickel, Daria Podorskaja, Juliane Fluck (2022) Pre2Pub—Tracking the Path From Preprint to Journal Article: Algorithm Development and Validation, Journal of Medical Internet Research
Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, Irene Neuner, Klaus Mathiak, Martin Hofmann-Apitius and Pegah Sarkheil (2022) Deep Learning-based detection of psychiatric attributes from German mental health records, Volume 161, May 2022, 104724, DOI: 10.1016/j.ijmedinf.2022.104724
2021
Carsten Oliver Schmidt, Juliane Fluck, Martin Golebiewski, Linus Grabenhenrich, Horst Hahn, Toralf Kirsten, Sebastian Klammt, Matthias Löbe, Ulrich Sax, Sylvia Thun, Iris Pigeot (2021) COVID-19-Forschungsdaten leichter zugänglich machen – Aufbau einer bundesweiten Informationsinfrastruktur, Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz, (), S.1-9,
Carsten Oliver Schmidt, Juliane Fluck, Martin Golebiewski, Linus Grabenhenrich, Horst Hahn, Toralf Kirsten, Sebastian Klammt, Matthias Löbe, Ulrich Sax, Sylvia Thun, Iris Pigeot, NFDI4Health Task Force Covid-19, Wolfgang Ahrens, Johannes Darms, Jörg Henke (2021) COVID-19-Forschungsdaten leichter zugänglich machen – Aufbau einer bundesweiten Informationsinfrastruktur, Bundesgesundheitsblatt - Gesundheitsforschung - Gesundheitsschutz, 64 (9), S.1084-1092
Johannes Darms, Jörg Henke, Xioaming Hu, Carsten Oliver Schmidt, Martin Golebiewski, Juliane Fluck, NFDI4Health Task Force COVID-19 (2021) Improving the FAIRness of Health Studies in Germany: The German Central Health Study Hub COVID-19, Studies in Health Technology and Informatics, 287 (), S.78-82
John Mantas (Ed.) , Lăcrămioara Stoicu-Tivadar (Ed.) , Catherine Chronaki (Ed.) , Arie Hasman (Ed.) , Patrick Weber (Ed.) , Parisis Gallos (Ed.) , Mihaela Crişan-Vida (Ed.) , Emmanouil Zoulias (Ed.) , Oana Sorina Chirila (Ed.) , Juliane Flu (2021) Facilitating Study and Item Level Browsing for Clinical and Epidemiological COVID-19 Studies, Studies in Health Technology and Informatics
Juliane Fluck, Birte Lindstädt, Wolfgang Ahrens, Oya Beyan, Benedikt Buchner, Johannes Darms, Ralf Depping, Jens Dierkes, Hubertus Neuhausen, Wolfgang Müller, Hajo Zeeb, Martin Golebiewski, Markus Löffler, Matthias Löbe, Frank Meineke, Sebastian Klammt, H (2021) NFDI4Health – Nationale Forschungsdateninfrastruktur für personenbezogene Gesundheitsdaten, Bausteine Forschungsdatenmanagement, (2), S.72-85
Lisa Langnickel, Johannes Darms, Roman Baum, Juliane Fluck (2021) preVIEW: from a fast prototype towards a sustainable semantic search system for central access to COVID-19 preprints, Journal of EAHIL (Vol 17 No 3 (2021)), S.8-14
Lisa Langnickel, Juliane Fluck (2021) Lisa Langnickel, Juliane Fluck: We are not ready yet: limitations of transfer learning for Disease Named Entity Recognition Report, www.biorxiv.org
Lisa Langnickel, Kilian Krockauer, Mischa Uebachs, Sebastian Schaaf, Sumit Madan, Thomas Klockgether, Juliane Fluck (2021) Information Extraction from German Clinical Care Documents in Context of Alzheimer’s Disease, Applied Sciences, 11 (22), S.10717
Lisa Langnickel, Roman Baum, Johannes Darms, Sumit Madan, Juliane Fluck (2021) COVID-19 preVIEW: Semantic Search to Explore COVID-19 Research Preprints, Studies in Health Technology and Informatics
2020
Lisa Langnickel, Roman Baum, Gabriele Wollnik-Korn, Brigitte Fischer-Wagener, Sumit Madan, Juliane Fluck (2020) The future of German MeSH: a new semi-automatic translation process and new services for search and annotation, GMS Medizinische Informatik, Biometrie und Epidemiologie, 16 (2), S.Doc07
2019
Raza-Ur Rahman, Anna-Maria Liebhoff, Vikas Bansal, Maksims Fiosins, Ashish Rajput, Abdul Sattar, Daniel S Magruder, Sumit Madan, Ting Sun, Abhivyakti Gautam, Sven Heins, Timur Liwinski, Jörn Bethune, Claudia Trenkwalder, Juliane Fluck, Brit Mollenhauer, S (2019) SEAweb: the small RNA Expression Atlas web application, Nucleic Acids Research